Facilitating Fusarium Oxysporum Computational Research

containers slurm debugging data handling data wrangling desktops software

Li-Jun Ma at UMass Amherst uses high-throughput sequencing that relies on HPC. We have been adapting her PacBIO SMRTAnalysis pipelines to run in a cluster environment. We are working extensively with PacBIO vendor support, and with the Ask.CI and XSEDE Campus Champions communities to tackle this project. Ask.CI has proved very useful and allowed us to progress farther with one of the pieces of software for Li-jun.

Student Research Computing Facilitator Profile:

We have a student facilitator, Brandon Cross, who is a computer systems engineering student. He had no biology domain experience prior to this project.

Project Status In progress
Project Owner John Griffin
Project Mentor John Griffin
Student Brandon Cross

Assessing the occurrence of extreme weather Large-area Enhanced Forest Inventory modeled on 3-D Airborne Laser Scanning data
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